Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs111718224 | chr1:224367129 | C/T | 0.000109 | 482 | 16.63 | 14.93 | 12.43 | KM Plot |
| THCA | rs11172299 | chr12:58075732 | T/G | 0.000204 | 478 | 14.75 | 19 | 16.8 | KM Plot |
| THCA | rs11172302 | chr12:58085273 | G/A | 0.000204 | 478 | 14.75 | 19 | 16.8 | KM Plot |
| THCA | rs11172305 | chr12:58098746 | C/T | 0.000166 | 480 | 14.92 | 17.88 | 16.8 | KM Plot |
| THCA | rs11172310 | chr12:58116969 | T/A | 0.000164 | 486 | 14.93 | 18.03 | 16.8 | KM Plot |
| THCA | rs11172314 | chr12:58123111 | A/G | 0.000162 | 489 | 14.93 | 17.88 | 16.8 | KM Plot |
| THCA | rs111750727 | chr10:104971203 | C/T | 2.61E-7 | 476 | 15.27 | 17.77 | 10.17 | KM Plot |
| THCA | rs11175285 | chr12:64617378 | G/C | 0.000233 | 487 | 15.93 | 15.3 | 17.73 | KM Plot |
| THCA | rs1117823 | chr2:48213162 | A/T | 0.000126 | 490 | 14.93 | 16.02 | 15.7 | KM Plot |
| THCA | rs11180592 | chr12:75997236 | C/T | 5.82E-5 | 484 | 16.38 | 14.9 | 9.33 | KM Plot |
| THCA | rs111814928 | chr6:24431922 | C/T | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs111841934 | chr7:75875806 | C/T | 0.000115 | 486 | 16.22 | 16.62 | 11.77 | KM Plot |
| THCA | rs11185829 | chr10:82267850 | G/A | 8.11E-6 | 484 | 16.27 | 15.17 | 14.93 | KM Plot |
| THCA | rs111871859 | chr1:220817225 | C/T | 2.78E-5 | 487 | 15.87 | 16.97 | 17.17 | KM Plot |
| THCA | rs111888582 | chr3:157557034 | GA/G | 3.92E-5 | 490 | 21 | 17.35 | 15.23 | KM Plot |